Jake Y. Chen, Ph.D.

Principle Investigator (Jan 2004-present)
Assistant Professor of Informatics & Computer Science

jakechen@iupui.edu

Scott H. Harrison, Ph.D.

Postdoc Fellow (May 2007-present)
Clinical Proteomics & Semantic Data Integration
"I have recently begun to specialize in using and developing various software tools and applications that help facilitate how volumes of heterogenous biological data can be efficiently handled for arriving at accurate and continually resolving approximations of natural system diversity and behavior."

sharriso@iupui.edu

Tianxiao Huan

Visiting PhD Student (August 2007-present), from College of Life Sciences, Shandong University, China
Translational Bioinformatics

huant@iupui.edu

Jiao Li

Visiting PhD Student (Sept 2007-present), from Dept. of Computer Science & Technology, Tsinghua University, China
Biomedical Literature Mining

li69@iupui.edu

Ragini Pandey

Research Assistant (Spring 2007-present)
IU Bioinformatics MS Candidate
Network Pharmacology

rapandey@iupui.edu

Sudipto Saha, Ph.D.

Postdoc Fellow (March 2007-present)
Clinical Proteomics

sahas@iupui.edu

Xiaogang Wu, Ph.D.

Postdoc Fellow (August 2007-present)
Translational Systems Biology

wu33@iupui.edu

Hongyun Zhu

Visiting Scholar (November 2007-present)
Computational System Development

zhuho@iupui.edu

Lavanya Dhanapalan

Research Assistant (August 2005-November 2007)
Purdue Computer Science M.S. Thesis
Biological Data Integration with the Semantic Web

Current: Software Engineer, Manhattan Associates, Atlanta, GA

Harini Kasamsetty

Research Assistant (Summer 2006-December 2007)
IU Bioinformatics M.S. Thesis
Network and Pathway Biology

Current: Bioinformatics Consultant, Dow Agrosciences, Indianapolis, IN

Warren Killian, M.S.

MS Project Student (Fall 2004-Summer 2006)
Purdue Computer Science M.S. Project
Complex Query Modeling

Current: Software Engineer, Indianapolis, IN

Sharmila Jothirajah, M.S.

MS Thesis Student (Spring 2005-Spring 2007)
Purdue Computer Science M.S. Thesis
Biological Database Management System

Current: Bioinformatics Developer, Regenstrief Institute, Indianapolis, IN

Shailaja Taduri, M.S.

MS Project Student (Fall 2005-Spring 2007)
Purdue Computer Science M.S. Project
Personalized Health Records

Current: Software Engineer, NCAA, Indianapolis, IN

SudhaRani Mamidipalli, M.S.

Research Assistant (Spring 2005-Spring 2006)
IU Bioinformatics M.S. Thesis
Human Protein Interactome Data Integration

Current: Medical Informatics Analyst, Eli Lilly, Indianapolis, IN

Mingyi Wang, Ph.D.

Postdoc Fellow (March 2007-Febuary 2008)
Computational Biology and Machine Learning

Current: Postdoc Researcher, Nobel Foundation, Dallas, TX

Zhong Yan, M.S.

Research Assistant (Fall 2005-Fall 2006)
IU Bioinformatics M.S. Thesis
Integrated Proteomics and Systems Biology Analysis

Current: Data Analyst, SallieMae, Indianapolis, IN

Bhavna Choudhury, M.S.

Bioinformatics Independent Studies (Fall 2004-Spring 2005)
Biomedical Image Data Mining

Current: Bioinformatics Scientist, Asuragen, Inc, Austin, TX

Usha Katta

Bioinformatics Independent Studies (Spring 2005-Fall 2007)
IU Bioinformatics M.S. Candidate
Personalization Techniques in Bioinformatics

Current: Database Developer, EMC Corporation, Inc, Boston, MA

Shubhada Labade

Consulting Programmer (Sept 2007-November 2007)
Web-based Applilcation Software Development

Current: Software Programmer, General Electric, Minneapolis, MN

Arti Singh, M.S.

Research Assistant (Spring 2006-Summer 2006)
Protein Interaction Network Analysis

Current: Software Engineer, Teranode, Inc., Boston, MA

Yijing Su, M.S.

Bioinformatics Independent Studies (Fall 2006)
Protein Interaction Network Analysis

Current: Data Analyst, Maryland

Pranav Vaidya, M.S.

Research Assistant (Fall 2005-Spring 2006)
Purdue Electrical and Computer Engineering M.S. Thesis
Integrated Proteomics Software Development

Andrey Sivachenko, Ph.D.

Affiliate Senior Scientist (2004-present)
MIT Broad Institute
The "ProteoLens" Project

asivache@iupui.edu

Manjula Alimina, M.S.

Affiliate Scienist (Spring 2004-Fall 2005)
Bioinformatics Data Warehousing

malimina@iupui.edu

Cary Woods

Project Coordinator (Summer 2005-Spring 2006)
Integrated Proteomics Software Development