International
[1] “Development of Systems Biology Resources and Applications at IUPUI” (July 2007), Invited Talk, Center for Systems Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
[2] “Computational Systems Biology: Research Opportunities & Applications for Post-genome Bioinformatics” (July 2007), Invited Seminar, School of Medicine, Sun Yat-Sen University, Guangzhou, Guangdong Province, China.
[3] “Post-genome Bioinformatics Applications in Cancer Research” (June 2007), School of Basic Medical Sciences, Dalian Medical University, Dalian, Liaoning Province, China.
[4] “Network Biology and Informatics” (June 2007), College of Life Sciences, Shandong University, Jinan, Shandong Province, China.
[5] “Computational Systems Biology: New Research Opportunities & Applications” (June 2007), Changchun International Workshop on Systems Biology, School of Computing, Jilin University, Changchun, Liaoning Province, China.
[6] “Systems Biology Informatics Supporting Translational Disease-specific Studies” (August 2006), Invited Seminar, Center for Bioinformatics, College of Life Sciences, Peking University, Beijing, China.
[7] “Systems Biology Informatics: Translational Bio-computing for Disease-specific Studies” (July 2006), Special Invited Seminar, Department of Computer Science and Technology, Tsinghua University, Beijing, China.
[8] “Bio-discovery Informatics” (July 2005), Bioinformatics Seminar Series, Center for Bioinformatics, College of Life Sciences, Peking University, Beijing, China.
[9] “Systems Biology Informatics: Shaping the Future Landscape of Biology using Computers” (July 2005), Invited Seminar, School of Information Sciences, Northeastern University, Shenyang, Liaoning Province, China.
[10] “Mining Protein Interactomes: A Case Study of Bio-discovery Informatics” (July 2005), invited speaker, Changchun International Bioinformatics Workshop in Changchun, Jilin Province, China.
[11] “Bio-discovery Informatics: A Case Study in Integrative Network Biology” (April 2005), The 50th Seminar of Center for Information Biology and DNA Data Bank of Japan (DDBJ), National Institute of Genetics of Japan, Mishima, Japan.
[12] “Protein Interactomics: An Emerging Frontier in Bioinformatics” (August 2004), Seminar, College of Life Sciences, Peking University Beijing, China.
[13] “Establishing Bioinformatics Infrastructure in Support of Biological Knowledge Discoveries” (March 2002) Bioinformatics Center, Institute of Biological Sciences, Chinese Academy of Sciences, Shanghai, China.
[14] “Managing Genomic Data” (May 2000) Bioinformatics Seminar Series, Peking University, Beijing, China.
US National
[15] “Translational Systems Biology: Connectivity, Network Models, & Panel Biomarker Discoveries” (April 2008), Invited Computational Biology and Bioinformatics Seminar, Northwestern University, Evanston, IL.
[16] “ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining” (February 2008), Plenary Talk, Fifth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society, Oklahoma, OK.
[17] “High-performance Database Computing in Biomedical Informatics” (December 2007), Panel Presentation, NSF Workshop on Biomedical Informatics, Portland, OR.
[18] “Translational Systems Biology: A Prelude” (November 2007), Keynote Speech, 2nd IEEE International Workshop on Data Mining in Bioinformatics, at the IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Fremont, CA.
[19] “Translational Bioinformatics and Systems Biology” (October 2007), Invited Seminar, Department of Computer Science, Northern Virginia Center, Virginia Tech, Falls Church, VA.
[20] “Introduction Knowledge Discovery and Data Mining in Bioinformatics: BIOKDD ’07”, (August 2007), Opening Speech, 7th International Workshop on Data Mining in Bioinformatics, ACM SIGKDD Conference, San Jose, CA.
[21] “Informatics as a Platform Supporting Translational Disease Therapeutics and Diagnostics”, (July 2006), Special Invited Seminar, Asuragen, Inc., Austin, TX.
[22] “Enabling ‘Fat Queries’ on a TeraGrid-powered Systems Biology Data Warehouse”, (June 2006), Conference Speaker, TeraGrid ‘06, Indianapolis, IN.
[23] “From Systems Biology to Personalized Medicine Informatics: How to Plan for Success?” (May 2006), Invited Seminar, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.
[24] “Computational Discovery from Large Biological Network Data” (June 2005), Invited Seminar, Prolexys Pharmaceuticals, Inc., Salt Lake City, UT.
[25] “A Bioinformatics Study of the Human Protein Interactome” (January 2004), Longwood Area Diabetes/Metabolism Research Seminar Series, Harvard Medical School Joslin Diabetes Center, Boston, MA.
[26] “The Human Protein Interactome: Computational Opportunities and Discovery Surprises” (November 2003), Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA.
[27] “Computational Proteomics: Mining Hidden Links between Proteins” (November 2003), National Center for Genome Resources, Santa Fe, NM.
[28] “Extended DBMS: Towards a Bio-computing Platform and a Scientific Discovery Tool” (October 2003), Life Sciences Group Seminar, Oracle Corporation, Burlington, MA.
[29] “Guilt-by-Association: Proteomics Analysis using Random Yeast 2-Hybrid Data” (October 2003), Windber Research Institute, Windber, PA.
[30] “Knowledge Discovery of High-throughput Protein-protein Interaction Data” (September 2003), Bioinformatics Seminar Series, Medical Informatics Department, University of Utah, Salt Lake City, UT.
[31] “Protein Informatics: Turning Data into Knowledge” (September 2002) with Emanuel Petricoin, Eric Neumann, Sudhir Sahasrabudhe, and Jacquelyn Fetrow. Bio.com Monthly InFocus Panel Discussion Webcast.
[32] “Developing a Computational Framework for Mining Yeast-2-hybrid Interaction Data” (August 2002) Science Seminar Series, Myriad Proteomics, Inc., Salt Lake City, UT.
[33] “Bioinformatics: Managing Biological Data and Discoveries” (April 2002) Monthly Seminar Series, ACM San Francisco Bay Area Local Chapter, Cupertino, CA.
[34] “Bioinformatics: Challenges, Opportunities, and Transitions” (March 2002) Bay Area Young Scientists Forum, Center for Integrated Systems, Stanford University, Palo Alto, CA.
[35] “Developing Bioinformatics Information Models” (November 2001) Science Seminar Series, Rosetta Inpharmatics, Bothell, WA.
[36] “A GeneChip Case Study of Discovery-oriented Bioinformatics” (October 2001) Cray-sponsored Computer Science Colloquia, University of Minnesota, Minneapolis, MN.
[37] “Building Genomic Database Systems for Bioinformatics” (January 2000) Science Seminar Series, Affymetrix, Inc., Santa Clara, CA.
[38] “Designing A Rat Expression Chip” (March 1999) Science Seminar, Affymetrix, Inc., Santa Clara, CA.
[39] “Experience with a Data-Centric Approach to Building Bioinformatics Systems” (August 1998) Medical Informatics Seminar Series, Stanford University, Palo Alto, CA.
Regional (Central Indiana)
[40] “Molecular Connectivity and Network Biology Tools for Complex Disease Studies” (April 2008), Indiana University – University of Notre Dame Biomedical Research Collaboration Mini-Symposium, Biocomplexity Institute, University of Notre Dame, South Bend, IN.
[41] “Translational Bioinformatics” (September 2007), Purdue - Intel Bioscience Technology Summit, Bindley Bioscience Center, Purdue University Discovery Park, West Lafayette, IN.
[42] “TBD: Computational Systems Biology Agenda 2.0” (April 2007), Integrative Biology Seminar, Eli Lilly & Company, Greenfield, IN.
[43] “Computational Systems Biology: New Research Opportunities & Applications” (February 2007), invited seminar, Cyber Center and Department of Computer Science, Purdue University, West Lafayette, IN.
[44] “Informatics-driven Systems Biology Research Supporting Translational Biomedical Discoveries” (November 2006), Indiana State Legislature Technology Conference, Indianapolis, IN.
[45] “Collaborative Research: What we learned from the Purdue-IU Clinical Proteomics Grant Application and where the Informatics Opportunities are?” (October 2006), Invited Panel Speaker, “Brilliant Minds, Powerful Technology & Life Sciences: Pushing the Frontiers of Knowledge for Indiana”, Indiana Technology TechPoint Summit 9 Conference, Indianapolis, IN.
[46] “Informatics as a Platform Supporting Translational Lung Cancer Research” (June 2006), Invited Lung Cancer Special Interest Group Seminar, Indiana University Cancer Center, Indianapolis, IN.
[47] “A Few Thoughts on Large Protein Interaction Networks” (March 2005), Round-table Discussions Seminar Series, Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN.
[48] “Human Protein Interactome: Reasoning on Structures of Randomness” (September 2004), Bioinformatics Seminar Series, Department of Statistics, Purdue University, West Lafayette, IN.
Local (Indianapolis)
[49] “SysNet: Building Systems Biology Tools towards Predictive, Preventive, and Personalized Biomedical Applications” (April 2008), Invited Seminar, Division of Clinical Pharmacology, Department of Medicine, Indiana University School of Medicine, Indianapolis, IN.
[50] “GeneTerrain: A Novel Visual Platform for Panel Biomarker Discoveries” (October 2007), Invited Talk, Center for Mathematical Biology & Center for Bio-computing Open House, Indiana University – Purdue University Indianapolis, Indianapolis, IN.
[51] “Network Biology and Informatics: Bridging Large-scale Biology and Disease-specific Studies” (April 2007), Invited Seminar Series, Department of Biology, School of Science, Indiana University – Purdue University Indianapolis, Indianapolis, IN.
[52] “Overview of Technologies for Predictive Lung Cancer Systems Biology Toward Improved Postoperative Survivals” (February 2007), invited seminar, Lung Cancer Working Group, Indiana University Cancer Center, Indianapolis, IN.
[53] “Network Biology Research: Connecting the Dots in Biology” (February 2007), Indiana University School of Informatics Bioinformatics Faculty Research Workshop, Bradford Woods, Martinsville, IN.
[54] “Protein Interactions, Networks, and Hubs” (May 2005), Seminar Series, Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN.
[55] “Protein-protein Interaction Data: a Global Perspective” (April 2005), Seminar Series, Department of Biology, School of Science, Indiana University Purdue University Indianapolis, Indianapolis, IN.
[56] “Ideas and Tools for Studying Protein Interactomes” (March 2005), Invited Seminar, Division of Integrative Biology, Eli Lilly and Company, Indianapolis, IN.
[57] “Database Research Opportunities in Bioinformatics” (February 2005), Bioinformatics Graduate Colloquium, School of Informatics, Indiana University Purdue University Indianapolis, Indianapolis, IN.
[58] “Discovery Informatics: A Case Study in System-scale Protein Interactomics Research” (January 2005), Indiana University Cancer Center seminar series, Indiana University School of Medicine, Indianapolis, IN.
[59] “Unraveling Protein Interaction Networks” (December 2004), IEEE Central Indiana Chapter Society of Engineering in Biology and Medicine meeting, co-locating with Biomedical Engineering Departmental Seminar at Indiana University Purdue University Indianapolis, Indianapolis, IN.
[60] “Collaborative Research Opportunities in Bioinformatics” (April 2004), Seminar, Indiana University School of Medicine Cancer Center, Indianapolis, IN.
[61] “The Human Protein Interactome: Initial Survey and Rising Computational Opportunities” (September 2003), Computer Science Department Seminar, Indiana University -Purdue University Indianapolis, Indianapolis, IN.